rs32190353 SNP Detail

Summary

• ID
  rs32190353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79768697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTAATTG ACTCTGTGTT
  TATTGTTTCC ACAGGGAGCT ATTGTTTCCA CATTGGTTCC ACTAGAACCT TATATTAAAT
  GTATGGTTTA CTTACATTAA ATGTGTTTGT ACTATAGTAA TTTCTAAAGA AATATTAATA
  TTAATCCCAA GTGCTGCAAT TAAAGGAGTG AGTGTGCCCC CACCATCTGG CTAAAAAAAT
  Y
  TTGATGTATT AAGTATTTTA TTTAGGATAA GGTTCTGAAA GGGAGGGAAT ATTTGAGGGA
  AAGGAAATGG GATTCGATAT TTTTATGGAG TGTTATATTT GTCTTCGTAT TGCTGAAAAC
  TGACAAATGC AGTATAAAAT TAATAAATAC CAGTTTTAAT GTAAAATCTT AATGGATATC
  TCATATTTTT GTATCTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49323070	NES12597715	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32190353					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49323070	NES12597715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79768697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf1	E74 like ETS transcription factor 1			Intron
				Noncoding-Transcript-Variant
Gm9243	predicted gene 9243			1357 bp downstream
Rr496131	regulatory region 496131			254 bp distal
Rr496132	regulatory region 496132			1530 bp distal
Rr496133	regulatory region 496133			793 bp proximal
Tssr126802	transcription start site region 126802			570 bp downstream
Tssr126803	transcription start site region 126803			550 bp downstream