rs32193223 SNP Detail

Summary

• ID
  rs32193223
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86587887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATATCTCC TTCCGTTTTC CAAGGGTGAG GTGGGGCTGA
  GGCAGAGGAG GAGCAAGAGT TTCAGCCCAG CTTGGACCAT AGAGAGCCTG CGGGCAGCCA
  S
  TGCTGCCTAG TGGGACACTA AAGGAAACCC AGACAATTCT CACTATGCAC CTTATAAGTT
  CTTCTGTGAG GTGTTTCCAT TTAAATAAAA CCTCGACCG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45618443	mCV23030870	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss321198260	CHEV_4_86315554	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32193223					SNP	C	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86587887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	259 bp proximal
Plin2	perilipin 2	within coordinates
Rr376780	regulatory region 376780	1722 bp upstream
Rr594783	regulatory region 594783	730 bp distal
Rr594784	regulatory region 594784	within coordinates
Rr594785	regulatory region 594785	400 bp proximal
Rr594786	regulatory region 594786	1315 bp proximal
Tssr1221	transcription start site region 1221	599 bp upstream
Tssr37738	transcription start site region 37738	543 bp upstream
Tssr42335	transcription start site region 42335	1090 bp upstream
Tssr42336	transcription start site region 42336	907 bp upstream
Tssr42337	transcription start site region 42337	189 bp upstream
Tssr42338	transcription start site region 42338	165 bp upstream
Tssr42339	transcription start site region 42339	143 bp upstream
Tssr42340	transcription start site region 42340	336 bp downstream
Tssr42341	transcription start site region 42341	380 bp downstream