rs32194107 SNP Detail

Summary

• ID
  rs32194107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58545930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA AGTTATTACT TACTATGTTT
  Y
  ATCAATAGGA GGGAATTCAT GCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45117378	mCV22736705	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss149138154	ENSMUSSNP1875348	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs32194107					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58545930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	1527 bp distal
Gm15834	predicted gene 15834	within coordinates
Orc2	origin recognition complex, subunit 2	1816 bp upstream
Rr396056	regulatory region 396056	1522 bp downstream
Rr411447	regulatory region 411447	1673 bp distal
Rr411448	regulatory region 411448	1788 bp distal
Rr411449	regulatory region 411449	1604 bp distal
Rr411450	regulatory region 411450	1079 bp distal
Tssr6780	transcription start site region 6780	1609 bp downstream
Tssr11783	transcription start site region 11783	1829 bp upstream
Tssr11784	transcription start site region 11784	1806 bp upstream