rs32195148 SNP Detail

Summary

• ID
  rs32195148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40517945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGCAAG ATGCAGAAAA
  GCACTTTGAG CGCAGCTCAT CACCCGACTC TTGTGGGCCT AGTGGGGGAT GGTCCGGGTC
  CGCAGCAGTC TCCTGGGAAC TCTGACAGCG ATGAAATGGT CTCCTGAGAG CCCAGGCAGA
  TGAGAGGACT TAACGGGCCC CAAGACACAC AGTTGGCATT TGTGATCAGC TGGCTTTCGC
  Y
  GGGGACTTTG CCAGTGGCCT AACCTTCCTG CCAAGAAACT GTGAGGGCGG AGGGCAGGGG
  CTCCAGGAGG GGAGCAGTAA CTGGAAGCAC AAAGTTTATG GAAGGAGACT GAGATTTCTT
  TGTGCCCTGC TAGATGGGCG AGGCATTAGG GAGGAGAGTT AGAGGGTCCA TTGGAAGAGG
  CTGTTGGAAG AAGTTGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39373856	mCV23354261	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147693545	ENSMUSSNP4544807	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss324932667	CHEV_15_40486095	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32195148					SNP	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40517945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	within coordinates
Rr501589	regulatory region 501589	497 bp proximal
Rr501590	regulatory region 501590	1060 bp proximal
Tssr4586	transcription start site region 4586	746 bp upstream
Tssr131170	transcription start site region 131170	332 bp upstream
Tssr131171	transcription start site region 131171	363 bp upstream
Tssr131172	transcription start site region 131172	445 bp upstream
Tssr131173	transcription start site region 131173	471 bp upstream
Tssr131174	transcription start site region 131174	520 bp upstream
Tssr131175	transcription start site region 131175	659 bp upstream
Tssr131176	transcription start site region 131176	710 bp upstream
Tssr131177	transcription start site region 131177	759 bp upstream
Tssr131178	transcription start site region 131178	788 bp upstream
Zfpm2	zinc finger protein, multitype 2	493 bp upstream