rs32197478 SNP Detail

Summary

• ID
  rs32197478
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34876605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATAAGT CTACCTGGGG
  GGTGGGAGGG GGATCAATAA ATAGGCTTCT CCATAGGAAT AAAGGACATT GGAACACAAA
  GCCCTCCAGT GCTGTATGAT TGACTAAGCA ACAGCTTTGG ATTTCTAGTC TCCACATACA
  GCTTTCATTT TAGATTAGTT CTCTTGCAGG TGGAATAGCA GGCAGAGAGA GAAGTGCGCA
  B
  GTTTGTTGTT CTCATCCTTT CAAAACGACA TCAGAGTGGA GACAACTGTA AAGTTTGCTT
  TTGGGAAATT TATCTAGGTG TGTACCATCA TTTTTGAGTT TTAAAAAATT GTAGAATATA
  CATTTTAGGG ATTAAAAAGT AGAATTCCTT CAATTCTTGT GGTTGCTTGG TTTCTGGTCA
  TCCTGAGACA GAGGGAATCT                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss39374279	mCV23392764	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		C
ss49449288	NES12597375	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C		C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32197478					SNP	G	T	C	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449288	NES12597375	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34876605 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	231 bp upstream
Tssr133983	transcription start site region 133983	118 bp upstream