rs32199198 SNP Detail

Summary

• ID
  rs32199198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:63565138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGGACAG AGCCAGACCC TGTGTAGGTT GCAAGTCCTA
  GCAAGTATAA GTGCAGGAAC CCTAGACCAC ATTATACACC AAACAGCTTT CTCCAAACTG
  R
  TGAATGGACT CCAGGTTTAT GCCCTTTACC ATGAACCATG ATAAAAACTC TTTCAGGGAA
  ACACATAATT CCTAAATGGT AACTATGTGA GGGAGGAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46116900	mCV25343835	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		A
ss48254214	NES11791125	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	A	A	G	A	A
ss144834749	ENSMUSSNP6149922	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32199198					SNP	G	A	G	G	G	G	G	G	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48254214	NES11791125	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63565138 () rs orientation: forward

Symbol	Name	Function Class
E030018B13Rik	RIKEN cDNA E030018B13 gene	1467 bp upstream
Gm53391	predicted gene, 53391	within coordinates
Klf13	Kruppel-like transcription factor 13	Intron
Rr647715	regulatory region 647715	941 bp proximal
Tssr66988	transcription start site region 66988	1490 bp upstream
Tssr66989	transcription start site region 66989	1851 bp upstream