rs32202386 SNP Detail

Summary

• ID
  rs32202386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65019348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCCATAA GATCTCAATA CCATAATTTA TGTGTAAAAG
  CACACCTTCT AAATCACCTT GCCACAGCAA GCTATTGGAA ACACTTCTCT TGGAATAACA
  Y
  TTTCCAAGTG TGTTGTCTTG ACTAACAAGT ACCAGAGCTC ACACTCTGAA ACAAACTGAC
  ATTCTGTGTA ATATGGCAAC AAAGCCTTTC ATCCCAGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46116674	mCV23294042	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss144901069	ENSMUSSNP7018600	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32202386					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65019348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	763 bp proximal
Gm57226	predicted gene, 57226	1703 bp upstream
Rr647944	regulatory region 647944	126 bp distal
Rr647945	regulatory region 647945	723 bp proximal
Rr647946	regulatory region 647946	1405 bp proximal
Rr647947	regulatory region 647947	1714 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	1822 bp upstream
Tssr72804	transcription start site region 72804	1274 bp downstream
Tssr72805	transcription start site region 72805	1289 bp downstream
Tssr72806	transcription start site region 72806	1308 bp downstream
Tssr72807	transcription start site region 72807	1610 bp downstream