rs32202645 SNP Detail

Summary

• ID
  rs32202645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141390474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAGGAT AGGAGAGAAT
  CAATTCTCAA AAGTTGACCT CTGACCTCCA CTCTCCCATT TACATACGGA CACACACACA
  GCTCCTAAAG TATAGTTACA CACACACACA CACACACACA CACAGAAAAA GCATGAAGGC
  AGGCTAGTCA ATCTTCCCCA CTCCTCTATT TTTCGGTTTC ACTATGTAGT CCAGGCTAGC
  Y
  TGGACCTCAG GACTCTGCTT TAGCCTCCTG TGTGCTGGAT GACAGAGATG CATCACCACA
  CCCAGCCTTC TGAGGCTGGC CTGTCTCCTC ACCCCTGTGC GTGCCCTTGA CAGGTAGTCA
  TTCCTACCAG GAATTGGGGC AATGACCAAT ACTAACAAGC CCCAACCCAA AGTGTCATAG
  TGTCACCGTC CCACGGCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45619987	mCV24075429	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147741773	ENSMUSSNP654314	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321388833	CHEV_4_141219078	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32202645					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141390474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	21 bp proximal
Gm54266	predicted gene, 54266	932 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603850	regulatory region 603850	442 bp proximal
Rr603851	regulatory region 603851	945 bp proximal
Rr603852	regulatory region 603852	1045 bp proximal
Rr603853	regulatory region 603853	1726 bp proximal
Tssr40091	transcription start site region 40091	1024 bp upstream
Tssr40092	transcription start site region 40092	1078 bp upstream
Tssr44355	transcription start site region 44355	836 bp downstream
Tssr44356	transcription start site region 44356	900 bp downstream