rs32204116 SNP Detail

Summary

• ID
  rs32204116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157395789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG TGAGGGTCAC TGGGGCCCCA
  Y
  GGAGGAGGGA GATGGCTTGG AAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45119024	mCV24591688	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss145824109	ENSMUSSNP6921005	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32204116					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157395789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr421413	regulatory region 421413			1464 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor			mRNA-UTR
				Noncoding-Transcript-Variant