rs32206809 SNP Detail

Summary

• ID
  rs32206809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:56544849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTAGTC AGCCAGCAAG
  CCTCTCTAAA TTGATTAGCC CCAGGTCCCA GTCAGAGACC CTCTCTCAAA ACCCAAGGAG
  AACAGCTTCT GAAGACTCTG ACATTGGAGA CTGACCTCTG ACCCCCCACA TGCACAGTCA
  CAAAGTGCAC ACACAAGAAA ATACACACAT ACCCACAACA CACACACATT ACTTCGAAAG
  Y
  ATGGTTTCTG TGGAACACAT ATGTCCTTGA CAGGATCATG AAGTGGAAGA CACAATACTG
  AAGCCTGTCA GGGACCATCT ACTGACTAGA GAAGTGACAG GCACTCTGCG AGCTTTGGGG
  AAGTGTGAGA TGGGAAGTGC GGTGGGTCAT GTCTCTAAGG AGTCACGAAA AACTTCGCAG
  CATCTCTTGG TGGGGTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49325557	NES12719995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32206809					SNP	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49325557	NES12719995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:56544849 () rs orientation: forward

Symbol	Name	Function Class
4930511P09Rik	RIKEN cDNA 4930511P09 gene	within coordinates
Gramd2b	GRAM domain containing 2B	Intron
Rr538167	regulatory region 538167	748 bp proximal
Tssr5323	transcription start site region 5323	362 bp upstream