ATGGACCAGA ACAGAGACGG CTTCATCGAC AAGAATGACC TAAGGGACAC ATTTGCTGCC CTAGGTATGT GGCAGTGACA ACACCAGGGA AGGGGGTGGA GGGTGGGGAA TGCGGGCATC AAACAAAGCC AAGAACCCAT TTGTTATCTG CCGAAGTGGC TCAGCTGCTA CCAGCCCTTT GGAACAACTC CAGTCAGTGG Y CTTTATGCTT TCTCCTTTCC TCTCAACCCG GGGCGAGGGG GAGAGGAGAG GATTTTTTTT TTTTAAACAC ATTCCTGGCT CATAAATAGA AAACTCAAAT TACTAGGAAA AGAAAAGGGG AGAAAACAGA ATTACCCAGA AGGCTACACT CCGGCCAACA CTTCCGTCTC AATCCTTGAA ATCCTTCCAG ATCGATGCCT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss366510639 | MGP_WTSI_5_122552917 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | T | T | T | C | T | T | T | T | T | T | C | T | T | T | T | T | T | T | C | T | T | T | T |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs32209856 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | T | T | T | C | T | T | T | T | T | T | C | T | T | T | T | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss366510639 | MGP_WTSI_5_122552917 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr5:122240971 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Myl2 | myosin, light polypeptide 2, regulatory, cardiac, slow | within coordinates | ||||||
Rr108983 | regulatory region 108983 | 1030 bp proximal | ||||||
Rr124298 | regulatory region 124298 | within coordinates | ||||||
Rr407055 | regulatory region 407055 | 1059 bp distal | ||||||
Tssr48621 | transcription start site region 48621 | 1950 bp downstream | ||||||
Tssr48622 | transcription start site region 48622 | 1922 bp downstream | ||||||
Tssr48623 | transcription start site region 48623 | 1749 bp downstream | ||||||
Tssr48624 | transcription start site region 48624 | 1731 bp downstream | ||||||
Tssr48625 | transcription start site region 48625 | 1109 bp downstream | ||||||
Tssr48626 | transcription start site region 48626 | 249 bp downstream | ||||||
Tssr48627 | transcription start site region 48627 | 174 bp downstream | ||||||
Tssr48628 | transcription start site region 48628 | 27 bp downstream | ||||||
Tssr48629 | transcription start site region 48629 | within coordinates | ||||||
Tssr48630 | transcription start site region 48630 | 62 bp upstream | ||||||
Tssr48631 | transcription start site region 48631 | 239 bp upstream | ||||||
Tssr48632 | transcription start site region 48632 | 260 bp upstream | ||||||
Tssr53075 | transcription start site region 53075 | 143 bp upstream | ||||||
Tssr53076 | transcription start site region 53076 | 966 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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