rs32213920 SNP Detail

Summary

• ID
  rs32213920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6393543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTTGTT TTTAATAGAC
  TTTGATTAAA ATTTAGTCCA TAAATTCTAG AATACAGTTA ACTGTCTATG GGACAAGCCA
  TTCCCAAGTA AGGACTTTTG GTCAGTACCT TCAACTTTGT TACTAGCTTA AGAAAATTTT
  ATCTGTAAGA TTAAAATTAA AATTTAGACA TACCAGGGAC TGGGATGTCA GAGATATCAG
  Y
  AAGACAACAT CAAAATATAG TGTGTTTCTT ACCTAAGAGT TTTTGTGTAT GAAATAAGGC
  CTAGTGAAAT GTAACTCTAT TATGTTTCGT CAGGATGCTC AGATTGCAGA TATACTGTCA
  ACAGCTGGGA CTGTGGTTAC CATCACAATC ATGCCTACTT TTATCTTCGA ACACATTATT
  AAACGGTAAG TGAATAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45620473	mCV22885120	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss145961218	ENSMUSSNP6282966	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32213920					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6393543 () rs orientation: forward

Symbol	Name	Function Class
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	372 bp downstream
Tssr36397	transcription start site region 36397	105 bp upstream
Tssr36398	transcription start site region 36398	1081 bp upstream
Tssr36399	transcription start site region 36399	1189 bp upstream
Tssr36400	transcription start site region 36400	1315 bp upstream
Tssr36401	transcription start site region 36401	1371 bp upstream