rs32213926 SNP Detail

Summary

• ID
  rs32213926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3776620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTCAGC CAAGGCTACC
  TAGCCAGACC CTATTTTAGA ACAAGAACAA CAAAATTTTC CTTTGAATAA GTAGAAAAAC
  AAAAGAAAAC AGAACAGTAG TATACCCTCA ACTAGACAGA TACATCCACA GGCTCCTAAA
  AGGGACATAG CAAACTATAC CAAATGTCAT CTTCTGGATG CTTCTGTAGG CTTTTCACTG
  Y
  CCTGAGAAAC CTTGGGGACT TAGAGCAGCA CACAGAATTG GAAGAATCTG GGACGTGAAG
  CTTGATGACA TATCCCAAAG CCTCCATGTT TAATCCTCCC CACTTTACAG TATCTCCTGT
  AGCCAGGATT TTGTCCTCTG GGCCCTTTCC TGGCCAGAAG TGGGACCACA TACCTTAGAG
  AAGTTAGCGT TCGGTTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48139137	NES12122518	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32213926					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48139137	NES12122518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3776620 () rs orientation: forward

Symbol	Name	Function Class
Nlrc3	NLR family, CARD domain containing 3	within coordinates
Rr326802	regulatory region 326802	381 bp proximal
Tssr139740	transcription start site region 139740	700 bp downstream
Tssr139741	transcription start site region 139741	720 bp downstream