rs32214289 SNP Detail

Summary

• ID
  rs32214289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18910171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTTTCAAT GTCAAGTTCT GGTCGTGCGA GGGGACTTAT
  GGGAAATCAG ATAAAAGATT TAGAGGAGGC TTTCGGGAAT AGGAGTGTCT TCTTTCACCC
  Y
  ATCCTCCTTC CAGAGCTGAG GGGCGACGCT TCAGGATGAA AAGCAGGAAG GACCCTGCCC
  CTTCAAACCC GTCCGCATCC TTATTGGCGG AGGAGCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46118800	mCV25048365	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss60972642	NES16155326	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	T	C	T		C	C	C	C		C
ss148469565	ENSMUSSNP2221276	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss322116605	CHEV_7_19761595	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32214289					SNP	C	C	T	C	C	C	C	T	C	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972642	NES16155326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18910171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	48 bp proximal
Cpgi18451	CpG island 18451	1879 bp proximal
Eml2	echinoderm microtubule associated protein like 2	175 bp upstream
Gm71808	predicted gene, 71808	within coordinates
Rr155271	regulatory region 155271	1571 bp distal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	170 bp upstream
Tssr64791	transcription start site region 64791	200 bp upstream
Tssr64792	transcription start site region 64792	237 bp upstream
Tssr64793	transcription start site region 64793	267 bp upstream
Tssr64794	transcription start site region 64794	402 bp upstream
Tssr64795	transcription start site region 64795	1957 bp upstream