rs32214790 SNP Detail

Summary

• ID
  rs32214790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3778883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCAGGTA TAGTGATACA
  CACCTGTTTT CTAGAACTTG GAAGGTTGGG GATCCTGAGT TCAAGGCCTG CCTGGACTAC
  AGAAGACTTT GTTCCCTGCC CTCCAGTGTC AAAACGATTG AAGACCAGCC CACTTTTGTT
  GGCCCAGGAC TTATGTATAA ATAATATCTC ATAAACAGCC GTGTGTGTTT TTCTGCAGTG
  R
  TGTGGACATT GTAAACTAGT GTCACTGAGG ACCAGAAGGG AAAGCATGAG CGTGGAAGAC
  ATGGCTGTCT TCAGAATCAT TGCTGAACCT CAGTTTCAGC AACACTAATG GTGGGTATTT
  TGTCATGAGC CGAAGGCCGA GAACTGCCTG TGAGACATAA CAGACATGAG AAGCTGTCAA
  GACCATCTCT CTCAGAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48139153	NES12122465	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32214790					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48139153	NES12122465	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3778883 () rs orientation: forward

Symbol	Name	Function Class
D16Mit32	DNA segment, Chr 16, Massachusetts Institute of Technology 32	1896 bp proximal
Nlrc3	NLR family, CARD domain containing 3	within coordinates
Rr326802	regulatory region 326802	1420 bp distal
Tssr139740	transcription start site region 139740	1547 bp upstream
Tssr139741	transcription start site region 139741	1508 bp upstream