rs32219383 SNP Detail

Summary

• ID
  rs32219383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135982151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACATGAGTG TGTACACATA GTTCTGGGGC
  GTACGGGGGG AGGGTGTCCT GGGAGTGCAA GCCTGCACAC ATGAGTGTGT ACACATAGTT
  CTGAAAATCT GGTTTTCCTC CCATTTCCCC CTCTCCCGAT CCTACTCAGC CTGAACATAA
  Y
  CAAACTCCAA CCCTACCCCC GAGCCACTTT GGGGTACAAG CCCCCCGCCA CATGACTCTC
  TCTTAGCATT ATAGTGACTA TTCAGACTGG CCTTTAGGAA TTTCATGCCC TCAACCCCAC
  AGATCCCACA GATGGCTCCA GGGCTCTCCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45120277	mCV23623374	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss319994516	CHEV_1_137950990	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32219383					SNP	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135982151 () rs orientation: forward

Symbol	Name	Function Class
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	within coordinates
Tssr9037	transcription start site region 9037	1652 bp downstream
Tssr9038	transcription start site region 9038	1617 bp downstream
Tssr9039	transcription start site region 9039	1587 bp downstream
Tssr9040	transcription start site region 9040	1455 bp downstream