rs32221270 SNP Detail

Summary

• ID
  rs32221270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16188264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT CTCTTGCCTC ACTAGTTACA
  Y
  CTCCTCTTAC ACCTCCTTCA TCGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46118957	mCV22944377	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss148386793	ENSMUSSNP898759	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss322110717	CHEV_7_17039688	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32221270					SNP	C	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16188264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	802 bp distal
Cpgi18378	CpG island 18378	670 bp proximal
Npas1	neuronal PAS domain protein 1	1379 bp downstream
Rr400123	regulatory region 400123	1421 bp downstream
Rr642666	regulatory region 642666	1919 bp distal
Rr642667	regulatory region 642667	1550 bp distal
Tmem160	transmembrane protein 160	within coordinates
Tssr64613	transcription start site region 64613	1371 bp downstream
Tssr64614	transcription start site region 64614	1308 bp downstream