rs32221297 SNP Detail

Summary

• ID
  rs32221297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18910798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCGGTGGC TGTGGTGGGG
  CAATGGCGGA GCGCGGCCCG GCCTTCTGCG GCCTCTACGA CACGTCCTCT CTGCTGCAAT
  ACTGCAACGG TGAGAGCCCC CTTCCTAGTT CAGACCCTGG CCCCGCCCAG GGTGGACCTA
  CCTCCTCCTG CCCCAACCCT TTTCTTCCAA GTCCTTATCT CCTCCCTTGT GAGAGATTCT
  Y
  CCTTTCTCCT CATCAACAGG ATTCTGACCC CAAAACAAGG TCCTTTATCC CCAAAGTCAC
  GATCCTGCTC CCCCTATCCC AACAAACACC TGCTCCGAAG GTGTCCAGAC AGAGGGAAGG
  GTAAAGATCG TAGAGGAGCC TGTGAGGGAG AGGGCAGACC TGGGGTTGGG GTAGGGAGTC
  AGCTCGATGT GGAACTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46119457	mCV25048377	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss60972639	NES16155329	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T		T	C	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32221297					SNP	T	T	C	C	C	T	T	C	T	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972639	NES16155329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18910798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	63 bp distal
Cpgi18451	CpG island 18451	1252 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	262 bp upstream
Rr155272	regulatory region 155272	1403 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	433 bp downstream
Tssr64791	transcription start site region 64791	399 bp downstream
Tssr64792	transcription start site region 64792	361 bp downstream
Tssr64793	transcription start site region 64793	336 bp downstream
Tssr64794	transcription start site region 64794	180 bp downstream
Tssr64795	transcription start site region 64795	1330 bp upstream