rs32222631 SNP Detail

Summary

• ID
  rs32222631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:59036820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC TTCTTAAAAA CACATTGTTT
  Y
  GTTATAAGAA CTCTTTGTAA TAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45121503	mCV24804887	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss51261636	NES14277550	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	C	T	T	T		C	C	C		C
ss149141150	ENSMUSSNP1778355	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss319738139	CHEV_1_59054505	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32222631					SNP	C	C	T	T	C	T	C	T	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51261636	NES14277550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59036820 () rs orientation: forward

Symbol	Name	Function Class
C2cd6	C2 calcium dependent domain containing 6	Intron
Gm55816	predicted gene, 55816	within coordinates