rs32225491 SNP Detail

Summary

• ID
  rs32225491
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89281659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT TTACTGAATG CATCAGTCCC
  K
  TGAGCTAGCA CTGCCTGTGA GGTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46120142	mCV23843632	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		T
ss61033130	NES16094195	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		G	T	T	T		G	T	T	G		G
ss145284066	ENSMUSSNP6564091	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss322312440	CHEV_7_96780961	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32225491					SNP	T	T	T	T	T	T	T	G	G	T	T	T	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61033130	NES16094195	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89281659 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	within coordinates
Cpgi19393	CpG island 19393	160 bp proximal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	within coordinates
Rr650822	regulatory region 650822	within coordinates
Rr650823	regulatory region 650823	663 bp proximal
Tssr67672	transcription start site region 67672	37 bp downstream
Tssr67673	transcription start site region 67673	1 bp downstream
Tssr67674	transcription start site region 67674	32 bp upstream
Tssr67675	transcription start site region 67675	48 bp upstream
Tssr67676	transcription start site region 67676	105 bp upstream
Tssr67677	transcription start site region 67677	238 bp upstream
Tssr67678	transcription start site region 67678	424 bp upstream
Tssr67679	transcription start site region 67679	500 bp upstream
Tssr67680	transcription start site region 67680	554 bp upstream