rs32226071 SNP Detail

Summary

• ID
  rs32226071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79973543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT TCTGCATCTA TTTGCATTTC
  Y
  GTAAGCCTGC TTCTGATACC TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39378081	mCV22873956	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss63570365	NES17024174	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	T	T		C	T	T	C		C
ss325030237	CHEV_15_79919772	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32226071					SNP	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63570365	NES17024174	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79973543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	1427 bp proximal
Gm24204	predicted gene, 24204	789 bp upstream
Gm31134	predicted gene, 31134	1391 bp downstream
Rr304341	regulatory region 304341	343 bp distal
Rr312104	regulatory region 312104	1257 bp proximal
Syngr1	synaptogyrin 1	1994 bp upstream
Tssr132156	transcription start site region 132156	1856 bp upstream
Tssr132157	transcription start site region 132157	1978 bp upstream
Tssr135417	transcription start site region 135417	439 bp upstream