rs32227269 SNP Detail

Summary

• ID
  rs32227269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135934635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGAAGCC GATTTGCAAC AGCCTCAAAG AACTATCAAG
  GCTGCCTCTA GGCTGCCTGG ACTTGGGCAA ATTACCTCCC CATCTCTGGG CCTCAGTTTC
  Y
  CTATTGAGTG AGCAATTGGC TCGAATATTT TCCAAACTCC TGCTAGAATC ATTAGAGCCG
  CAGAGATCCT TATGGACATC GCTAATTAGT CCCTGCAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45121916	mCV27553518	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145550640	ENSMUSSNP1854927	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32227269					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135934635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	531 bp proximal
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	555 bp upstream
Rr28609	regulatory region 28609	365 bp proximal
Rr372097	regulatory region 372097	1600 bp upstream
Tmem9	transmembrane protein 9	1322 bp upstream