rs32227770 SNP Detail

Summary

• ID
  rs32227770
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188919010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTCTAGC ACCTCCTTTC
  CCCAGGTTCA TACTAGTCTC TTGGTTGGAC TCTAATGCAA ATGTAGATAT GAGCAGTAGG
  TTGAGTGCAG GGTAAGTCTG AAGTAGCAGG GCTCAGCATG AAGAAGCCTC TGCAGATCTT
  TGGTGGCATC CACCATAGAA AGTGTCAAAA TGGACCTCAG CCTAGAACCA CGGAGAGGCC
  W
  TAAACAGATC TGAGCTGCTG ATGCCACACC ACGTGTGGGA CTGTGATGTT AAAAGTCTAC
  GGTTCAGATA AATTAATAAA ACATCTATAT GCAGTTAGTG AGGCATAAAA AGGAGAGAAG
  AAAAATTCTT ATTACCTTAC TAGCAGCTAA ACGGGGGGGG GGGGGGGGGG GGGGGGCTAA
  GCCCTAGCCA AGACGATCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45121667	mCV23589181	ABI	CRAMUS_MOUSE	f	SNP		A	T					T
ss46754746	NES10650453	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		T	T	T	T	T	T	T	T
ss146484418	ENSMUSSNP6389058	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32227770					SNP	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46754746	NES10650453	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188919010 () rs orientation: forward

Symbol	Name	Function Class
Rr1101	regulatory region 1101	461 bp upstream
Rr425767	regulatory region 425767	1021 bp distal
Rr425768	regulatory region 425768	751 bp proximal
Rr425769	regulatory region 425769	946 bp proximal