rs32230285 SNP Detail

Summary

• ID
  rs32230285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155924316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC GCCATGGAGC TGCTGTCCCG
  Y
  GTCCTGCTGT GGAAACTGCT GCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45623103	mCV24238751	ABI	CRAMUS_MOUSE	f	SNP		T	T			C	T
ss46784460	NES10993755	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C		T	C		C		T
ss148117620	ENSMUSSNP150374	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss321443274	CHEV_4_155213968	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs32230285					SNP	T	T	T	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784460	NES10993755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155924316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	953 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	Coding-Synonymous
Mxra8os	matrix-remodelling associated 8, opposite strand	within coordinates
Rr398927	regulatory region 398927	1325 bp upstream
Rr606588	regulatory region 606588	1624 bp distal
Rr606589	regulatory region 606589	123 bp distal
Rr606590	regulatory region 606590	309 bp proximal
Rr606591	regulatory region 606591	1225 bp proximal
Rr606592	regulatory region 606592	1252 bp proximal
Rr606593	regulatory region 606593	1288 bp proximal
Tssr40724	transcription start site region 40724	175 bp downstream
Tssr40725	transcription start site region 40725	155 bp downstream
Tssr40726	transcription start site region 40726	97 bp downstream
Tssr40727	transcription start site region 40727	35 bp downstream
Tssr40728	transcription start site region 40728	19 bp downstream
Tssr40729	transcription start site region 40729	1242 bp upstream
Tssr40730	transcription start site region 40730	1262 bp upstream
Tssr40731	transcription start site region 40731	1287 bp upstream
Tssr40732	transcription start site region 40732	1309 bp upstream
Tssr40733	transcription start site region 40733	1553 bp upstream
Tssr44980	transcription start site region 44980	1169 bp downstream
Tssr44981	transcription start site region 44981	1235 bp downstream