rs32230603 SNP Detail

Summary

• ID
  rs32230603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90978654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA CCCTTTGTCA GAACATAGGT
  Y
  GATTCATTTA CTTTTTATTT AGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45122313	mCV22308908	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs32230603					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90978654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	1578 bp proximal
Gm70621	predicted gene, 70621	1492 bp upstream
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr18304	regulatory region 18304	547 bp proximal
Rr29813	regulatory region 29813	1146 bp proximal
Rr396168	regulatory region 396168	1829 bp upstream
Tssr8030	transcription start site region 8030	1396 bp downstream
Tssr8031	transcription start site region 8031	1227 bp downstream
Tssr12924	transcription start site region 12924	1884 bp downstream
Tssr12925	transcription start site region 12925	1902 bp downstream
Tssr12926	transcription start site region 12926	1922 bp downstream
Tssr12927	transcription start site region 12927	1955 bp downstream