rs32230974 SNP Detail

Summary

• ID
  rs32230974
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATC TTTAAATAAA TAAGTGGGTG
  W
  GCAGTGGTTG TGCATGCCTT TAATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45122585	mCV25088206	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss145506425	ENSMUSSNP5002681	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss319982681	CHEV_1_136390403	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32230974					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	670 bp proximal
Rabif	RAB interacting factor	813 bp upstream
Rr396314	regulatory region 396314	638 bp upstream
Rr418927	regulatory region 418927	75 bp distal
Rr418928	regulatory region 418928	332 bp proximal
Rr418929	regulatory region 418929	904 bp proximal
Rr418930	regulatory region 418930	1345 bp proximal
Tssr8899	transcription start site region 8899	802 bp upstream
Tssr8900	transcription start site region 8900	910 bp upstream
Tssr8901	transcription start site region 8901	1160 bp upstream