AAAAA GCAAACCGAG TCTGATGTCA R AAGAATGACG TATTTCCTAA CCTAT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39379526 | mCV23812969 | ABI | CRAMUS_MOUSE | f | SNP | G | G | A | G | |||||||||
ss49379132 | NES12542492 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | G | G | G | G | G | G | A | |||
ss147038835 | ENSMUSSNP2922559 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | |||||||||||
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
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rs32233680 | SNP | G | G | A | A | A | A | G | G | G | G | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49379132 | NES12542492 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr15:4024529 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi6911 | CpG island 6911 | 314 bp proximal | ||||||
Gm2093 | predicted gene 2093 | 992 bp upstream | ||||||
Rimoc1 | RAB7A interacting MON1-CCZ1 complex subunit 1 | Intron | ||||||
Rr369897 | regulatory region 369897 | 43 bp upstream | ||||||
Rr498628 | regulatory region 498628 | within coordinates | ||||||
Rr498629 | regulatory region 498629 | 687 bp proximal | ||||||
Rr498630 | regulatory region 498630 | 1001 bp proximal | ||||||
Tssr133595 | transcription start site region 133595 | 197 bp downstream | ||||||
Tssr133596 | transcription start site region 133596 | 661 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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