rs32236978 SNP Detail

Summary

• ID
  rs32236978
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135876117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG GGTCAGAGGG TGGGCCGAAC
  W
  GGGGTTCCAA CTGACTTTGG TAATA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45623770	mCV25111128	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss321354272	CHEV_4_135704721	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32236978					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135876117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15099	CpG island 15099	102 bp distal
Gm68296	predicted gene, 68296	1272 bp downstream
Rr377254	regulatory region 377254	1113 bp downstream
Rr602287	regulatory region 602287	1609 bp distal
Rr602288	regulatory region 602288	within coordinates
Rr602289	regulatory region 602289	1007 bp proximal
Rr602290	regulatory region 602290	1111 bp proximal
Rr602291	regulatory region 602291	1626 bp proximal
Rr602292	regulatory region 602292	1706 bp proximal
Tssr39669	transcription start site region 39669	1558 bp downstream