rs32237299 SNP Detail

Summary

• ID
  rs32237299
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:144991567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAGAGAGAGA ACTGCTTTCT
  K
  GGCCCAGCTA GCACCCTCAC TTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48141262	NES11826516	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	T	T	T	T	T	T	T	G	G	T	G
ss133960814	ENSMUSSNP40997	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32237299					SNP	G	G	G	T	G	T	T	T	T	T	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141262	NES11826516	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144991567 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	Intron
Gm15687	predicted gene 15687	1696 bp upstream
Gm26666	predicted gene, 26666	1718 bp upstream
Rr641039	regulatory region 641039	174 bp distal
Rr641040	regulatory region 641040	1206 bp proximal
Tssr64030	transcription start site region 64030	1664 bp downstream
Tssr64031	transcription start site region 64031	1689 bp downstream
Tssr64032	transcription start site region 64032	1764 bp downstream
Tssr64033	transcription start site region 64033	1795 bp downstream
Tssr64034	transcription start site region 64034	1823 bp downstream
Tssr64035	transcription start site region 64035	1884 bp downstream