rs32237303 SNP Detail

Summary

• ID
  rs32237303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144992317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGCTTA AAGAACTGAG
  CCCCCGCTCC ACTGACTGGT CACGTGACTC ACACGTGACC AATGTGGGCC TCTCGGAAGT
  GCTACAGGAA AATTGCGTTA ACACACCAGA AATCACACAG ACAGAATCCA CAGCACCTCA
  CTGTAGTATA TCTTACTATA TTTTGGTTTA AAACAAATCG CTTTGTGAGC AGAGGGCTTA
  Y
  CCTGAATTCA CCATTCCGCT TCGTGCTCCT AGCACTGTCC CTGAACACTG AGTGTCCCCT
  GTGGTTCAAA ACAGACGACT CAAGTTCCAG TCCCTCTCTG AACCCTGCCA GGATGTGAGG
  TCACAGGGAC ATTCTGTACT ATGGGTGACA ATTGACAGTG AGTATCAGAG CCAGGAAAGT
  GGCAGAGCCA AGCACCCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48141268	NES11826477	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32237303					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141268	NES11826477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144992317 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1522 bp proximal
Gm15687	predicted gene 15687	946 bp upstream
Gm26666	predicted gene, 26666	968 bp upstream
Rr641039	regulatory region 641039	924 bp distal
Rr641040	regulatory region 641040	456 bp proximal
Tssr59519	transcription start site region 59519	1947 bp upstream
Tssr64030	transcription start site region 64030	914 bp downstream
Tssr64031	transcription start site region 64031	939 bp downstream
Tssr64032	transcription start site region 64032	1014 bp downstream
Tssr64033	transcription start site region 64033	1045 bp downstream
Tssr64034	transcription start site region 64034	1073 bp downstream
Tssr64035	transcription start site region 64035	1134 bp downstream
Tssr64036	transcription start site region 64036	1994 bp downstream