rs32238248 SNP Detail

Summary

• ID
  rs32238248
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144992908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAGTAC AGAGCCCTTT
  TCTTGGGCAA GCAGAGCGAA GGGTTAAGCT GATGCAATTT AAAAAGCAAC CTCCAGTTCC
  TATTCATTAA TTCGCTCTTT TCCGATAAAA TGTCTAATTC ATAAGACAAA ACAAGCAGCT
  TGCTGTTAGG CAAATTTTGC TTTGCTGACT GGTATTAATC TCAAATGGCT TTTCCCCTGG
  S
  TGTAATTTAA AATTCAAGAA CTCACTCACT TTAAATTCCC CAAACCCTAA TCTCAACCTG
  AAATGCATTA ACTAACTCAG TCACTTAACC ACCCCAGCAA ATGCCTTACC CTAAAAGTCT
  CCGCCACTTC TTCTGATCCT CTTTCTCCAG CAAACGGCGC GGAGCATCCA TTACTGCAGT
  CCTTAAAAAT AAAAATAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss48141274	NES11826480	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32238248					SNP	C	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141274	NES11826480	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144992908 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	931 bp proximal
Gm15687	predicted gene 15687	355 bp upstream
Gm26666	predicted gene, 26666	377 bp upstream
Rr145931	regulatory region 145931	1507 bp distal
Rr145932	regulatory region 145932	within coordinates
Tssr2055	transcription start site region 2055	1865 bp downstream
Tssr59519	transcription start site region 59519	1356 bp upstream
Tssr64030	transcription start site region 64030	323 bp downstream
Tssr64031	transcription start site region 64031	348 bp downstream
Tssr64032	transcription start site region 64032	423 bp downstream
Tssr64033	transcription start site region 64033	454 bp downstream
Tssr64034	transcription start site region 64034	482 bp downstream
Tssr64035	transcription start site region 64035	543 bp downstream
Tssr64036	transcription start site region 64036	1403 bp downstream
Tssr64037	transcription start site region 64037	1419 bp downstream
Tssr64038	transcription start site region 64038	1474 bp downstream
Tssr64039	transcription start site region 64039	1494 bp downstream
Tssr64040	transcription start site region 64040	1513 bp downstream
Tssr64041	transcription start site region 64041	1528 bp downstream
Tssr64042	transcription start site region 64042	1548 bp downstream
Tssr64043	transcription start site region 64043	1567 bp downstream
Tssr64044	transcription start site region 64044	1627 bp downstream
Tssr64045	transcription start site region 64045	1657 bp downstream