rs32238253 SNP Detail

Summary

• ID
  rs32238253
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144994802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGAGAC ACATTAGCAT
  CACAAGGGCC CTCTCTCCGA TCTGGATTTG CAGCAGGGAC CTGCATTTGT GCTTCGGCTC
  TCGCCTGCAA CAGTCCTACA GTTGCTGACC TCGAAACGTG GACTCTGCCT CGCTGTTCCC
  TGCCAGTAGC CTCCGATGCA ACCACCATAC GGCCTATGGT TCAGGCAAAA CAGCCGTCCT
  K
  TTAGTGCGGG GTGGTGTCTG TCGCTTTTAA CCCCCGCCCT TGAAGGGCTG ATGAAAGATG
  ATTGCTAAGA GTTTCCGACG ACCTGTGCTA CAAACAGTGA GACCCAGCCT CCCAAGCAAG
  CAAGCAAACA AACCAACCTA GGGGTTAGAA TCCACAATCA CTACCAGCTC CAAGGACCAC
  CAGCTGACCT TGAGTCCTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss48141282	NES11826484	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs32238253					SNP	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141282	NES11826484	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144994802 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	within coordinates
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	within coordinates
Rr148333	regulatory region 148333	1599 bp proximal
Tssr2055	transcription start site region 2055	within coordinates
Tssr59519	transcription start site region 59519	528 bp downstream
Tssr64030	transcription start site region 64030	1553 bp upstream
Tssr64031	transcription start site region 64031	1522 bp upstream
Tssr64032	transcription start site region 64032	1462 bp upstream
Tssr64033	transcription start site region 64033	1416 bp upstream
Tssr64034	transcription start site region 64034	1379 bp upstream
Tssr64035	transcription start site region 64035	1319 bp upstream
Tssr64036	transcription start site region 64036	484 bp upstream
Tssr64037	transcription start site region 64037	434 bp upstream
Tssr64038	transcription start site region 64038	406 bp upstream
Tssr64039	transcription start site region 64039	389 bp upstream
Tssr64040	transcription start site region 64040	370 bp upstream
Tssr64041	transcription start site region 64041	347 bp upstream
Tssr64042	transcription start site region 64042	329 bp upstream
Tssr64043	transcription start site region 64043	271 bp upstream
Tssr64044	transcription start site region 64044	255 bp upstream
Tssr64045	transcription start site region 64045	223 bp upstream