rs32238851 SNP Detail

Summary

• ID
  rs32238851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:27034276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACCAGTG GGTCCTTAAG
  CCTCTGGAGT TTACTAAGGG ACAATATGGC CAGGTTTTAT TTGAACCCTA GAACTACCAC
  ATAAATTATT TGTTGCAGAG TAATGTGGGA CTGTGAGTAG ATACTATTTC TGTGTTTTCT
  TATCATGATA GACATTTGGA AACTTCAGAT TTGGGGATAT TACCAACAAG ATGTTATAAG
  Y
  CTCTGTGCAC AAGTATTTTT GGAAGTATCT GTCATCTCAT GTAGATAGGA GTATCTGTAC
  CATATGATAG GTATGTGGTG TGTGTGTGTA TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGCA TTCGAAAGCC AGAGATCAAA TCTTGAGTGT CATTTCTAAG GAGCCATGTA
  CCTTGATTTT TGAGACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47642733	NES10289748	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32238851					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47642733	NES10289748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:27034276 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dpp6	dipeptidylpeptidase 6	within coordinates
Gm29784	predicted gene, 29784	773 bp upstream