rs32239328 SNP Detail

Summary

• ID
  rs32239328
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144996342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTGTGG TTCACTACCT
  GCCACTGTGA CCAAGTCTGT TCATTTTTGA GACAATGTCT CACTTAACCA ATGCTGGCTT
  CAAAGTCACT AAGTATCCCA CAGCATGAAC TTTGACTCCT CCCTCAATCA CCTCCCAAGT
  GCTGGAATTG CTAGAGTATT ACTCCACGAC CAGGTTATAC TGTGTGCTAA GCTCAAACCA
  K
  GCGACCTCCC CAGTGCCTGA ATCTTTGTTA TCTCACAACG TGGACAGGGA GCACTTGAGA
  TGGAACTGCA AATCAATTTG CTGCTCTGCC TAAAAAGGCG TAACTTGCTT TTACAGTGCT
  GGTATTTTCT TTTTTCTGAA TGTATTCTTT CACCGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss48141292	NES11826292	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs32239328					SNP	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141292	NES11826292	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144996342 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1403 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	1341 bp distal
Rr148333	regulatory region 148333	59 bp proximal
Tssr2055	transcription start site region 2055	1537 bp upstream
Tssr64037	transcription start site region 64037	1974 bp upstream
Tssr64038	transcription start site region 64038	1946 bp upstream
Tssr64039	transcription start site region 64039	1929 bp upstream
Tssr64040	transcription start site region 64040	1910 bp upstream
Tssr64041	transcription start site region 64041	1887 bp upstream
Tssr64042	transcription start site region 64042	1869 bp upstream
Tssr64043	transcription start site region 64043	1811 bp upstream
Tssr64044	transcription start site region 64044	1795 bp upstream
Tssr64045	transcription start site region 64045	1763 bp upstream