rs32239332 SNP Detail

Summary

• ID
  rs32239332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144996444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGC TGCTCTGCCT AAAAAGGCGT
  R
  ACTTGCTTTT ACAGTGCTGG TATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss48141298	NES11826300	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G	A	A		A	G
ss133960889	ENSMUSSNP5323587	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss322067451	CHEV_6_144999238	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs32239332					SNP	G	G	A	G	G	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141298	NES11826300	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144996444 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1505 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	1443 bp distal
Rr148333	regulatory region 148333	within coordinates
Tssr2055	transcription start site region 2055	1639 bp upstream
Tssr64041	transcription start site region 64041	1989 bp upstream
Tssr64042	transcription start site region 64042	1971 bp upstream
Tssr64043	transcription start site region 64043	1913 bp upstream
Tssr64044	transcription start site region 64044	1897 bp upstream
Tssr64045	transcription start site region 64045	1865 bp upstream