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rs32239333 SNP Detail
Summary
  • ID
    rs32239333
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:144996810 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAAATCTTA AATCCAATTG
    TCCCTTTTGC AAGAACAATC AATTAACACT CCATGACCTA ATCTTTAAAT CTCCTTACCC
    CTGCTTCTAT AATCTGCACA GGGCAAGCCT GCTGAGAGAC AGTCCACAGA TGACCTGGTA
    ATGGGAGTCT CCTCTTCCCT CACACTGCCG TACAAAATGT GTCACAGGGT GGCCATATAC
    R
    GACAGATTAC AAGGCAGTCC AGTGTCACAC GGAAAATGAA TGTGCTAAAT GCTTCTGACA
    CCCCAGGCTC CTCTCAGGCC AGAAAGCCAA GCCTACCCCT TACTCCCCCA CTCTCCTATG
    GGCTGCTCAT TATCTCTGCC TTAGCCTGAA AGCCTCCAGC CATCTTGAAG CTCTGTCACA
    GGAGTGACAG ATGGACCAAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
ss48141300 NES11826206 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
rs32239333 SNP G G G G G G A G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48141300 NES11826206 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:144996810 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bcat1 branched chain aminotransferase 1, cytosolic Intron
Cpgi18152 CpG island 18152 1871 bp distal
Gm15687 predicted gene 15687 within coordinates
Gm26666 predicted gene, 26666 within coordinates
Rr641041 regulatory region 641041 1782 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory