ACAAATCTTA AATCCAATTG TCCCTTTTGC AAGAACAATC AATTAACACT CCATGACCTA ATCTTTAAAT CTCCTTACCC CTGCTTCTAT AATCTGCACA GGGCAAGCCT GCTGAGAGAC AGTCCACAGA TGACCTGGTA ATGGGAGTCT CCTCTTCCCT CACACTGCCG TACAAAATGT GTCACAGGGT GGCCATATAC R GACAGATTAC AAGGCAGTCC AGTGTCACAC GGAAAATGAA TGTGCTAAAT GCTTCTGACA CCCCAGGCTC CTCTCAGGCC AGAAAGCCAA GCCTACCCCT TACTCCCCCA CTCTCCTATG GGCTGCTCAT TATCTCTGCC TTAGCCTGAA AGCCTCCAGC CATCTTGAAG CTCTGTCACA GGAGTGACAG ATGGACCAAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48141300 | NES11826206 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
||||
rs32239333 | SNP | G | G | G | G | G | G | A | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48141300 | NES11826206 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr6:144996810 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Bcat1 | branched chain aminotransferase 1, cytosolic | Intron | ||||||
Cpgi18152 | CpG island 18152 | 1871 bp distal | ||||||
Gm15687 | predicted gene 15687 | within coordinates | ||||||
Gm26666 | predicted gene, 26666 | within coordinates | ||||||
Rr641041 | regulatory region 641041 | 1782 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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