rs32239793 SNP Detail

Summary

• ID
  rs32239793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97240550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCAGCCA GCCGGAGGGA
  GGAGGGGATA TTTTTAACAT TTGTGGATTT CATGATGCAA ATACCTCACC TCCCCCACCA
  CATCAGCCTT CCAGCCACCA CAGTCACTTC CTGGATATTG AACCATCTGC TCTTGCAAGC
  GGCTGCCAGC AGCCCAAGCA ATCCATTGTA CTAGCCCCTC AAGGTGAGTC CCGCAGATGT
  Y
  CATTACACGG AATTTTGAAT GTCAAGAGCT AAGAAAAAGT ACATTTAAAA ACTGGGAAAA
  AAACTAATTT CTAGGATTTT CTTCCACTAC CCACCCCACC CTGCCCCACT TCCTCTATAA
  AACAAATTAC AATCTTCGGG CACCATCATT TTATAAGAGA AACGGTGTTT TAGCTGACAT
  GGCGGCATAC CTGTCATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39379053	mCV23239679	ABI	CRAMUS_MOUSE	f	SNP	T	C					C	C
ss63608756	NES17040649	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		C	C	T		T	C	C	T		T
ss148436585	ENSMUSSNP1594629	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss325076708	CHEV_15_97173100	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32239793					SNP	T	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608756	NES17040649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97240550 () rs orientation: forward

Symbol	Name	Function Class
Gm33325	predicted gene, 33325	within coordinates
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr404591	regulatory region 404591	within coordinates
Rr508793	regulatory region 508793	within coordinates
Rr508794	regulatory region 508794	382 bp proximal