rs32240579 SNP Detail

Summary

• ID
  rs32240579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:27033840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTGGGG GGAGGCTATA
  ATGGTAGGGT CACACTTGGG AGGACTGGGG AGTAAGGATG ATCAGGGTGC ATTATGTGAA
  ATACCCAAAT AATCAATAAA ATATTATATT AAAAATCTGA TAGTATATTG GGCCATTGTA
  AAGCACCTGG ATTGTCCACC TCAGGATTGT TACTGAAAGA GATGAACAGC AGAGAAAATG
  R
  GAGGCAACAG ATAAGACCTT ATTAGCTGAC TGGGTTCCCT GTTTGTTACT TGTCACATCT
  CAGAGTACTT ACTTCTGAGG GTGGATGTCA TACAGCTAGG CCTTGAAGTT CTATCAAGAT
  TTAATGTTGC TAGCCTTCCA GCCTGCAAAG TGTCTAGGCA CATTGATGGC CATTAGTAAT
  TGAGATCTGA ACGTAGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47642751	NES10289730	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32240579					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47642751	NES10289730	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:27033840 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dpp6	dipeptidylpeptidase 6	within coordinates
Gm29784	predicted gene, 29784	337 bp upstream