rs32242079 SNP Detail

Summary

• ID
  rs32242079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105282830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACACCCAG GCAGTTACCC AGATCATTGG GGTTACCTGA
  ATCTGTCACG CGTCCCTTTC ACCCCCTTCT GCGTGTTGAC ATCAAGTGGA AACAGTAAGC
  R
  TTTGGGAGAC AAGAGGCTGA CAAGCAGGAA GCGCGATTGA GACCCAGCTT TGTTCAGCCT
  GCAGTGAAAT ACATGCAGTA ATAGTTAGAT ACTCCCAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45123823	mCV25150505	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss145082607	ENSMUSSNP3875251	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32242079					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105282830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	681 bp proximal
Gm17634	predicted gene, 17634	902 bp upstream
Rnf152	ring finger protein 152	within coordinates
Rr416387	regulatory region 416387	412 bp proximal
Rr416388	regulatory region 416388	913 bp proximal
Rr416389	regulatory region 416389	922 bp proximal
Rr416390	regulatory region 416390	1454 bp proximal
Rr416391	regulatory region 416391	1555 bp proximal
Rr416392	regulatory region 416392	1638 bp proximal
Tssr8255	transcription start site region 8255	1612 bp upstream
Tssr8256	transcription start site region 8256	1664 bp upstream
Tssr8257	transcription start site region 8257	1741 bp upstream
Tssr8258	transcription start site region 8258	1954 bp upstream
Tssr13126	transcription start site region 13126	1375 bp downstream
Tssr13127	transcription start site region 13127	1535 bp downstream
Tssr13128	transcription start site region 13128	1553 bp downstream
Tssr13129	transcription start site region 13129	1664 bp downstream
Tssr13130	transcription start site region 13130	1829 bp downstream