rs32242086 SNP Detail

Summary

• ID
  rs32242086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:181338561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATTTTCAC GTCCTGGCCC TCCTTTATCT TGTAAACTGG
  CTTCAGTGCC TGCAACTGCT GCTTCAAATC CTTCTGGGTC TTTCTGCCCT GCAGGAGCTG
  R
  GCTTGAAGAG CTGCGTTTCT CTGGTTGTAT CTGGATGCCA ATTCTTGTCT CTCGCGTTCT
  ATCTCGCCAC ATTCTTGGAC GTACTGCTTC CACAGCTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45123426	mCV25243967	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss146396635	ENSMUSSNP4343109	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32242086					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181338561 () rs orientation: forward

Symbol	Name	Function Class
Ccdc121rt1	coiled-coil domain containing 121, retrogene 1	Coding-Synonymous
Cpgi1136	CpG island 1136	132 bp distal
Rr424762	regulatory region 424762	445 bp proximal
Rr424763	regulatory region 424763	488 bp proximal
Rr424764	regulatory region 424764	1445 bp proximal