rs32242150 SNP Detail

Summary

• ID
  rs32242150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133989423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAA GCACACGATT TCAGCCATAG
  Y
  TCAGTCTCTA ACAGATGGGA AGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45123146	mCV22719285	ABI	CRAMUS_MOUSE	f	SNP		T	T				T	C
ss51373640	NES14471784	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T		C	T		C	T	T	C		T
ss145503364	ENSMUSSNP3793737	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss319981824	CHEV_1_135958262	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32242150					SNP	T	T	T	T	C	T	T	C	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373640	NES14471784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133989423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	246 bp distal
Cpgi759	CpG island 759	1442 bp proximal
Gm19497	predicted gene, 19497	738 bp upstream
Gm57140	predicted gene, 57140	within coordinates
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	1623 bp distal
Tssr8846	transcription start site region 8846	595 bp downstream
Tssr8847	transcription start site region 8847	578 bp downstream
Tssr8848	transcription start site region 8848	535 bp downstream
Tssr8849	transcription start site region 8849	1768 bp upstream
Tssr8850	transcription start site region 8850	1835 bp upstream
Tssr13763	transcription start site region 13763	870 bp upstream
Tssr13764	transcription start site region 13764	812 bp upstream
Tssr13765	transcription start site region 13765	726 bp upstream
Tssr13766	transcription start site region 13766	1597 bp downstream
Tssr13767	transcription start site region 13767	1630 bp downstream
Tssr13768	transcription start site region 13768	1670 bp downstream
Tssr13769	transcription start site region 13769	1681 bp downstream