rs32242389 SNP Detail

Summary

• ID
  rs32242389
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:27033156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGACCTT TTTTTTTTCC
  TGTTCCAAAG TTTTTATTGT TATTGTTTTA ATATGATCCA TCTACTCATT AGAATAAAGA
  ACTGTGTCTA GGGATCCATC AGTAATGTTG AAAAGACCTC TGACTTATCC ACCTCTACTA
  ATAAGACTCT TCATGGGCAC AATAGTTGTA GTAAATCAGA TCTTCAGGCT TAAACCATAG
  W
  TGGTTCTCTT TCTCAGTACT TTACCCTGAA TCACTGCTAT GAATGATGTT CCTTCCCACT
  TGAGTGCAGA AATCCACTTG AATTGTGCCT GGCTTAGAAT CACCTGGATT GGACTCTCCC
  AGCATCACTC TCTGTCTTCA TCACTTTGAG TCCCTCCCAG ACCATGGCCA CCCTGAGTTC
  ATGTACATCA TCAACCCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47642772	NES10289770	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32242389					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47642772	NES10289770	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:27033156 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dpp6	dipeptidylpeptidase 6	within coordinates
Gm29784	predicted gene, 29784	within coordinates