rs32245016 SNP Detail

Summary

• ID
  rs32245016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126267530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AGTGACCCAC
  AGTGGAGTTA GTTGTTCCTG CTGATTAACA CTGAAGCCTT CTCCGTGAGA TTTCACAAGA
  CCTGGGATAA GGCAGTTTCT GGAGAAGCTG TATGCTATCT TCTGCCAGCT TGGAGGCCAG
  GCAGCCGGAT CACACACAGG AGTGGGAATG GCTTCAGTCT TAGAGGAATG AGTCCCTGCA
  R
  CCTGGGGCCC ACACTGAGCT GGGCTCGTCT CTCTAGGCCC CTCTTTTCCC TCTGCTACTT
  GGAAGCTCCC GGAGTTTCCC TATGTATTTA CTCCTTACTA TATTGGAATT CCCAGAAGAA
  GCAGCTTAAT GGGAAGAAGG ATTTATTTTG GCTTCATGCT TTGAGAGGGC TGTCTTTATG
  GAAGGGAAAG CATGGCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46122427	mCV23683625	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss47256176	NES11552340	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32245016					SNP	G	G	A	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47256176	NES11552340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126267530 () rs orientation: forward

Symbol	Name	Function Class
D930031A20Rik	RIKEN cDNA D930031A20 gene	within coordinates
Rr381448	regulatory region 381448	within coordinates
Sgf29	SAGA complex associated factor 29	within coordinates