rs32245702 SNP Detail

Summary

• ID
  rs32245702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30814414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTATCC TGGCGCCCCC
  AGTCCCAGGC TCCCATCCAG GGAGCAGCCG ACCGTGGGCT GGGGCCAGAG CATGCAAAGA
  CAGAGGTTGG GCCGGGGGTC AATAATGACA ATGTGTGACC AGCCACCAGG GGGACACCTG
  GAGTGGCAGG TCAGAACACC GGGCGGGCGA GGTTGAACTT CCAGGGGACT TGAGGGTTTT
  R
  AGGGAGGAGA ACTTGGGGGA GTCCTCAGAT TTCTGAGTTA GCAGTGAAAG CAGGCTGGAG
  TAGTCTGGGG GTTTCTGGGA TCTCTTACAC GGGCTGCTGA ACATCAGACT GGTGGGGGAT
  GAGGGGCTTC GCATTCTGTG CCTTACCCTG GGGTTCGCCG GAGATGGTGC AGGTTTGGGG
  TTAGTCTCCG GGCCTGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46122443	mCV24563011	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32245702					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30814414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	946 bp proximal
Hpn	hepsin	within coordinates
Rr645021	regulatory region 645021	within coordinates
Rr645022	regulatory region 645022	283 bp proximal
Rr645023	regulatory region 645023	1607 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	1535 bp downstream
Tssr71932	transcription start site region 71932	273 bp upstream
Tssr71933	transcription start site region 71933	238 bp downstream
Tssr71934	transcription start site region 71934	1903 bp downstream