rs32245804 SNP Detail

Summary

• ID
  rs32245804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74547047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCATGAT AGCATAGTGA
  TATCCTGACC AAAAAGAAAA GAAAAACATC CTCCAGAGGG TGGTGGCAGC ACCTCTGTAA
  TATCAGCTCA GACAGGCAGA TCACAAGTTC AAGACCAGCC TGGCAATTTA ATAAGACTAT
  CTCAGAAAAC ATTTTTAAAA AGATGGGTAG AGATATTAAT TATAGGAGAA TATTTGATCT
  R
  GCATGTGTGA CACCCTTGGT TCAGTCTCCA GAGACTCCTC CCAAAAGTAA ACAATCTGAT
  TGGCATGACA ATGCTTTTAA TCCCAGCACC CAGGGAAGCA GAGGCAGGCA GATCTCTGCA
  TTCAAGGGCA GCCTGGTCTA CAGAGCGTTT TATTTAGGCC AGCCTGAGAT ACACAGTAAG
  ATGCAGTCTC AAAAGGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45123379	mCV24840613	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss144687835	ENSMUSSNP1982358	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32245804					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74547047 () rs orientation: forward

Symbol	Name	Function Class
Cnot9	CCR4-NOT transcription complex, subunit 9	within coordinates
Cpgi385	CpG island 385	971 bp distal
Rr396106	regulatory region 396106	1812 bp downstream
Rr413211	regulatory region 413211	1820 bp distal
Rr413212	regulatory region 413212	655 bp distal
Rr413213	regulatory region 413213	1223 bp distal
Tssr7425	transcription start site region 7425	1850 bp downstream
Tssr7426	transcription start site region 7426	1783 bp downstream
Tssr7427	transcription start site region 7427	1768 bp downstream
Tssr7428	transcription start site region 7428	1514 bp downstream
Tssr7429	transcription start site region 7429	1501 bp downstream
Tssr7430	transcription start site region 7430	1170 bp downstream
Usp37	ubiquitin specific peptidase 37	within coordinates