rs32246234 SNP Detail

Summary

• ID
  rs32246234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30252704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAGTTTC TAAATAAGGA ATACTAATGC CTGAGTTTGG
  CCTCAATCCC AGTGTCCCTG AGAGGCCCGC CGCAGGGGCG GCACAGGGCA CAGTATAAAT
  Y
  GGAGCCAGCG TGCGTTTGGG CACTGCGGGG CCCAGGGTGG CAGCGTAGGA ACAGGATGGA
  GATCCCCGTG CCTGTGCAGC CTTCTTGGCT GCGCCGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46122368	mCV25394914	ABI	CRAMUS_MOUSE	f	SNP		C						T
ss60990788	NES16136659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	T	C	C		T	C	C		C
ss322135212	CHEV_7_31338298	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32246234					SNP	C	C	C	C	T	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990788	NES16136659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30252704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	628 bp distal
Cpgi18809	CpG island 18809	within coordinates
Cpgi18810	CpG island 18810	947 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Mir9769	microRNA 9769	375 bp downstream
Proser3	proline and serine rich 3	980 bp upstream
Rr400242	regulatory region 400242	787 bp downstream
Tssr65779	transcription start site region 65779	715 bp downstream
Tssr65780	transcription start site region 65780	7 bp downstream
Tssr65781	transcription start site region 65781	14 bp upstream
Tssr65782	transcription start site region 65782	1493 bp upstream
Tssr65783	transcription start site region 65783	1568 bp upstream
Tssr65784	transcription start site region 65784	1592 bp upstream
Tssr65785	transcription start site region 65785	1644 bp upstream
Tssr65786	transcription start site region 65786	1662 bp upstream
Tssr65787	transcription start site region 65787	1756 bp upstream
Tssr71787	transcription start site region 71787	963 bp upstream
Tssr71788	transcription start site region 71788	904 bp upstream
Tssr71789	transcription start site region 71789	1386 bp downstream
Tssr71790	transcription start site region 71790	1498 bp downstream