rs32246386 SNP Detail

Summary

• ID
  rs32246386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA GACGGAAGGA GAGAGTGAGA
  R
  ACTCCAGGTT CCAGATGCCT TCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46122082	mCV23679106	ABI	CRAMUS_MOUSE	f	SNP	G						A
ss47254132	NES11563286	PERLEGEN	MM_PANEL2	f	SNP		A	A	G	A	A	A	G	G		A	A	A	A		G
ss145873532	ENSMUSSNP2831818	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						A
ss322450801	CHEV_7_133591922	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32246386					SNP	G	A	A	G	A	A	A	G	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254132	NES11563286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047580 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	768 bp upstream
Tssr69023	transcription start site region 69023	494 bp downstream
Tssr74664	transcription start site region 74664	1820 bp upstream
Tssr74665	transcription start site region 74665	1494 bp upstream
Tssr74666	transcription start site region 74666	1435 bp upstream
Tssr74667	transcription start site region 74667	1407 bp upstream
Tssr74668	transcription start site region 74668	1204 bp upstream
Tssr74669	transcription start site region 74669	1190 bp upstream
Tssr74670	transcription start site region 74670	934 bp upstream
Tssr74671	transcription start site region 74671	913 bp upstream
Tssr74672	transcription start site region 74672	896 bp upstream
Tssr74673	transcription start site region 74673	757 bp upstream
Tssr74674	transcription start site region 74674	729 bp upstream
Tssr74675	transcription start site region 74675	715 bp upstream
Tssr74676	transcription start site region 74676	506 bp upstream
Tssr74677	transcription start site region 74677	463 bp upstream
Tssr74678	transcription start site region 74678	442 bp upstream
Tssr74679	transcription start site region 74679	422 bp upstream
Tssr74680	transcription start site region 74680	404 bp upstream
Tssr74681	transcription start site region 74681	378 bp upstream
Tssr74682	transcription start site region 74682	367 bp upstream
Tssr74683	transcription start site region 74683	164 bp upstream
Tssr74684	transcription start site region 74684	62 bp upstream
Tssr74685	transcription start site region 74685	26 bp upstream
Tssr74686	transcription start site region 74686	186 bp downstream
Tssr74687	transcription start site region 74687	240 bp downstream
Tssr74688	transcription start site region 74688	344 bp downstream
Tssr74689	transcription start site region 74689	413 bp downstream
Tssr74690	transcription start site region 74690	834 bp downstream
Tssr74691	transcription start site region 74691	877 bp downstream
Tssr74692	transcription start site region 74692	1744 bp downstream
Tssr74693	transcription start site region 74693	1770 bp downstream
Tssr74694	transcription start site region 74694	1893 bp downstream