rs32246828 SNP Detail

Summary

• ID
  rs32246828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43117538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTAGAGCG AGGCACTCTC CTCACTGGCT TTCACATCCA
  GGCATGGACA GATAGCTCTG AAGTGGACAG AGTCACCATG AGTAGAGACT GGGTCTCCCT
  R
  CTCATTCTGG GCCCTCAGGA GCGATCAGCC ATAGTGCCAC TCCCTCCTCG GAACCCTGGG
  ACCTGGGCTT TTCGCATCTT GCCCATCTTG GGGTCTCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46122653	mCV22871813	ABI	CRAMUS_MOUSE	f	SNP	G	A	G				A
ss51478090	NES13969719	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	G	A	G	A	G	G
ss149073735	ENSMUSSNP1849960	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32246828					SNP	G	A	G	G	G	G	A	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478090	NES13969719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43117538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18933	CpG island 18933	1299 bp distal
Gm39000	predicted gene, 39000	1747 bp upstream
Rr645970	regulatory region 645970	1823 bp distal
Rr645971	regulatory region 645971	1516 bp distal
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates