rs32248658 SNP Detail

Summary

• ID
  rs32248658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13445026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCG GGGTACCACC CCGGGATTGC
  Y
  TGACAAAGCA AAGGCTGCTC AGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45124511	mCV23396718	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss148622300	ENSMUSSNP5285859	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32248658					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13445026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi41	CpG island 41	within coordinates
Gm29570	predicted gene 29570	within coordinates
Gm51852	predicted gene, 51852	1400 bp downstream
Gm70663	predicted gene, 70663	85 bp upstream
Ncoa2	nuclear receptor coactivator 2	719 bp upstream
Rr407895	regulatory region 407895	730 bp distal
Rr407896	regulatory region 407896	1109 bp distal
Rr407897	regulatory region 407897	229 bp distal
Rr407898	regulatory region 407898	522 bp distal
Rr407899	regulatory region 407899	within coordinates
Tssr5965	transcription start site region 5965	1884 bp downstream
Tssr10990	transcription start site region 10990	1138 bp upstream
Tssr10991	transcription start site region 10991	911 bp upstream
Tssr10992	transcription start site region 10992	733 bp upstream
Tssr10993	transcription start site region 10993	727 bp upstream
Tssr10994	transcription start site region 10994	620 bp upstream
Tssr10995	transcription start site region 10995	539 bp upstream
Tssr10996	transcription start site region 10996	391 bp upstream
Tssr10997	transcription start site region 10997	327 bp upstream