rs32252684 SNP Detail

Summary

• ID
  rs32252684
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65021245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCCTGTT TGTTTTTATC ACAGATCCGG CAGAATTCGA
  TTCACCCCCA CCCCCGAGAA CCCCAAACTC CTGTGTACTA AAGCTTTTTG ACTCCCTACA
  S
  AGACTTGTCT ACTTTCTCCT CAACCAGCAA CCCCAGATGG GCCCCACGCA GGAGTGTGAC
  AATTAAGGTC GGCCTGGCCA ATACCCAACT GTGGTTTCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	MSM/Ms
ss46123438	mCV23737708	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	G
ss144901079	ENSMUSSNP1995736	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	MSM/Ms
rs32252684					SNP	C	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65021245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19209	CpG island 19209			within coordinates
Gm57226	predicted gene, 57226			within coordinates
Rr647945	regulatory region 647945			493 bp distal
Rr647946	regulatory region 647946			184 bp distal
Rr647947	regulatory region 647947			within coordinates
Rr647948	regulatory region 647948			1877 bp proximal
Tjp1	tight junction protein 1			Intron
				mRNA-UTR
Tssr67032	transcription start site region 67032			64 bp downstream
Tssr72804	transcription start site region 72804			613 bp upstream
Tssr72805	transcription start site region 72805			597 bp upstream
Tssr72806	transcription start site region 72806			549 bp upstream
Tssr72807	transcription start site region 72807			210 bp upstream